انفورماتیک در زیست شناسی، بهداشت و غذا

انفورماتیک در زیست شناسی، بهداشت و غذا

Molecular Dynamic simulation of HIV-1 Protease, Integrase and Reverse- transcriptase with Delta-9-tetrahydrocannabinol and Curcumin as two herbal ligands

نوع مقاله : مقاله پژوهشی

نویسندگان
ُSamaneh Esmaeili shaikhabad 1
Hamid Mosaddeghi 2
Fatemeh Ravari 2
1 Department of Science - Faculty of Basic Sciences - Payam Noor University - Mashhad, Iran
2 Department of Chemistry, Payame Noor University, Tehran 19395-4697, Iran
10.22034/ibhf.2024.208761
چکیده
The HIV-1 virus has three important enzymes: protease, reverse transcriptase, and integrase, which are essential for vital functions. The Acquired immunodeficiency syndrome (AIDS) virus causes a significant number of deaths annually. Herbal drugs, are inexpensive, with minimal side effects, and have been used for many years alongside conventional medicine. In fact, herbal medicine forms the basis of modern pharmacology. In this study, we investigated the potential of two herbal compounds, Curcumin (CRC) and Delta-9-Tetrahydrocannabinol (THC), as inhibitors of HIV-1. After conducting 100 nanoseconds (ns) of molecular dynamics (MD) simulations for systems involving each of these three proteins in the presence of the ligands, we analyzed the simulated systems. The results, including root-mean-square deviations (RMSD), radius of gyration (Rg), root-mean-square fluctuation (RMSF), solvent accessible surface area (SASA), dictionary of secondary structure of proteins (DSSP), and g_mmpbsa, indicate that both ligands can bind to the active sites of the proteins and inhibit HIV-1 activity. These MD simulation results suggest that both CRC and THC are effective inhibitors of HIV-1.
کلیدواژه‌ها
Curcumin
Molecular Dynamics Simulation (MD Simulation)
HIV-1
Protease
Integrase
Reverse Transcriptase

موضوعات

عنوان مقاله English

Molecular Dynamic simulation of HIV-1 Protease, Integrase and Reverse- transcriptase with Delta-9-tetrahydrocannabinol and Curcumin as two herbal ligands

نویسندگان English

Samaneh Esmaeili shaikhabad 1
Hamid Mosaddeghi 2
Fatemeh Ravari 2
1 Department of Science - Faculty of Basic Sciences - Payam Noor University - Mashhad, Iran
2 Department of Chemistry, Payame Noor University, Tehran 19395-4697, Iran
چکیده English

Abstract:

The HIV-1 virus has three important enzymes: protease, reverse transcriptase, and integrase, which are essential for its vital functions. The AIDS virus causes a significant number of deaths each year. Herbal drugs are inexpensive, have minimal side effects, and have been used for many years alongside conventional medicine. In fact, herbal medicine serves as the foundation for modern medicine. To inhibit the activity of this virus, we investigated two herbal drugs, Curcumin) CRC (and Delta-9-Tetrahydrocannabinol (THC (. After conducting 100 ns of molecular dynamics (MD) simulations for systems involving each of these three proteins in the presence of the ligands, we analyzed the simulated systems. The results, including RMSD (Root-mean-square deviations), Rg(radius of gyration), RMSF(Root-mean-square Fluctuation), SASA(Solvent Accessible Surface Area), DSSP (Dictionary of Secondary Structure of Proteins), and g_mmpbsa, indicate that both ligands can bind to the active sites of the proteins and inhibit HIV-1 activity. These MD simulation results suggest that both CRC and THC are effective inhibitors of HIV-1.

کلیدواژه‌ها English

Delta-9-Tetrahydrocannabinol or Dronabinol (THC)
Curcumin
Molecular Dynamics Simulation (MD Simulation)
HIV-1
Protease
Integrase
Reverse Transcriptase

  • تاریخ دریافت 06 مهر 1403
  • تاریخ بازنگری 05 آبان 1403
  • تاریخ پذیرش 10 آبان 1403